Nano-scale materials possess many unique physical and chemical properties which are not found in bulk materials. The ability to synthesize these materials by design is one of the greatest challenges in materials science. Advances towards meeting this challenge will lead to discoveries in fields such as plasmonics, photonics, catalysis, and...
Systems of colloids coated with high-information polymers are powerful tools for designing crystal lattice with tailorable properties or studying the fundamentals of crystallization. By changing the colloid-colloid interaction strength or colloid shape, different types of lattices can be assembled. In this thesis, I present novel coarse-grained models to describe high-information...
Spherical nucleic acids (SNAs) are a class of structures composed of spherical nanoparticle cores that are densely functionalized with radially oriented, linear DNA. SNAs exhibit properties that are distinct from those of their linear counterparts. These constructs can readily enter cells, evade nuclease degradation, and bind complementary DNA targets with...
The rational and deliberate assembly of functional materials from nanoscale building blocks requires a fundamental understanding of interactions between individual components as well as their collective behavior. This thesis investigates the hierarchical organization of nanoparticles using DNA into well-defined three-dimensional materials on the micrometer and millimeter length scales. This assembly...
The nonlinear optical technique, second harmonic generation (SHG), is applied here for the first time to probe single and double strand DNA (ssDNA and dsDNA) chemically attached to fused quartz/water interfaces. DNA interfaces are often a critical functional component of biodetection, thus, the development of molecular biosensors requires a thorough...
This thesis focuses on the design of hybrid organic materials comprising polymers and small molecules for biodiagnostic and electronic applications. Specifically, the electrochemical and fluorescent signaling properties of terthiophene-functionalized polymers are combined with the enhanced recognition properties of DNA hybrid materials, culminating in the development of a "loaded" probe for...
A tetramer model for HIV-1 Integrase (IN) with DNA representing the LTR termini was previously assembled which predicted amino acid residues on the enzyme surface that interact with the LTR termini (Chen et al, 2006). A separate structural alignment of HIV-1, SIV, and ASV INs predicted which of these residues...
Neisseria gonorrhoeae is the causative agent of the sexually transmitted infection gonorrhea and is adapted to survive in humans, its only host. The N. gonorrhoeae cell wall is critical for maintaining envelope integrity, resisting immune cell killing, and production of cytotoxic peptidoglycan (PG) fragments. Deletion of the N. gonorrhoeae genes...
DNA is extremely versatile and powerful, both as a construct in biological applications and as a ligand in materials design due to the fact that its recognition properties can be programmed through sequence and length. Spherical nucleic acids (SNAs), nanoparticles surrounded by a dense shell of DNA or RNA, are...
Nucleic acids such as DNA or RNA of various lengths and structures have a wide scope of functions as therapeutic entities compared to conventional drugs. For instance, native and modified forms of nucleic acids can be used for gene silencing, genome editing, gene replacement, immune system modulation, and theranostics. While...