Cite this article: Shen, J., McFarland, A.G., Blaustein, R.A. et al. An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics. Microbiome 10, 206 (2022). https://doi.org/10.1186/s40168-022-01412-x and Background: Effective surveillance of microbial communities in the healthcare environment is increasingly important in infection prevention. Metagenomics-based techniques are promising due to their untargeted nature but are currently challenged by several limitations: (1) they are not powerful enough to extract valid signals out of the background noise for low-biomass samples,...
The textbook proceeds with an introduction to theory and concept building, moves to an explanation of causal inference (how do we 'know' whether something is causal?), and then provides a quick introduction to data and hypothesis testing. Following that, each chapter is devoted to a particular research method used within...