Index Catalog // Arch : Northwestern University Institutional Repository

Start Over

Filtering by: Creator Jiaxian Shen Resource type Research Paper Subject Metagenomics Subject Nosocomial infections--Prevention

1 entry found

List Gallery Masonry Slideshow

An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics

Description:

Cite this article: Shen, J., McFarland, A.G., Blaustein, R.A. et al. An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics. Microbiome 10, 206 (2022). https://doi.org/10.1186/s40168-022-01412-x and Background: Effective surveillance of microbial communities in the healthcare environment is increasingly important in infection prevention. Metagenomics-based techniques are promising due to their untargeted nature but are currently challenged by several limitations: (1) they are not powerful enough to extract valid signals out of the background noise for low-biomass samples,...

Keyword:

Quantification, Quantitative metagenomics, Low biomass, Viability, Machine learning, Environmental surveillance, Sequencing depth prediction, and Infection prevention

Subject:

Metagenomics, Quantitative research, Nosocomial infections--Prevention, Machine learning, and Environmental monitoring

Creator:

K. Allison Perry-Dow, Jiaxian Shen, Vincent B. Young, Ryan A. Blaustein, Mary K. Hayden, Alexander G. McFarland, Anahid A. Moghadam, Laura J. Rose, and Erica M. Hartmann

Contributor:

Centers for Disease Control and Prevention (funding agency)

Owner:

Jiaxian SHEN

Publisher:

Microbiome

Language:

English

Date Uploaded:

12/19/2022

Date Modified:

12/19/2022

Date Created:

2022-12-02

Resource Type:

Research Paper

Alternate Identifier:

DOI 10.1186/s40168-022-01412-x, PMCID PMC9716758, and PMID 36457108

LIBRARIES | ARCH

Limit your search

Type

Resource type

Creator

Contributor

Keyword

Subject

Language

Publisher

An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics

Limit your search

Search Constraints

Search Results