Biological systems comprise diverse collections of cellular and non-cellular components with intricate relationships and dynamic interactions. To gain system-level understanding, we must be able to accurately model these systems, both experimentally and computationally. Agent-based models (ABMs) in particular are a uniquely intuitive, modular, and flexible framework capable of supporting multi-scale,...
The ever growing desire for accurate estimation and efficient learning necessitates the efforts to quantitatively characterize uncertainties for models. In this thesis, four problems pertaining to uncertainty quantification are discussed: A sequential stopping framework of constructing fixed-precision confidence regions is proposed for a class of multivariate simulation problems where variance...
Sound is one of the most important mediums to understand the environment around us. Identifying a sound event in prerecorded audio (such as a police siren, a dog bark, or a creaking door in soundscapes) leads to a better understanding of the context where the sound events occurred. To do...
A core problem in many computer vision applications is visual recognition (including object classification, detection and localization). Recent advances in artificial neural networks (aka ”deep learning”) have significantly pushed forward the state-of-the-art visual recognition performances. However, due to the lack of semantic structure modeling, most current deep learning approaches do...
Modeling human language is at the very frontier of machine learning and artificial intelligence. Statistical language models are probabilistic models that assign probabilities to sequences of words. For example, topic models are frequently used text-mining tools to organize a vast set of unstructured documents by exploring their theme structure. More...
We address the problem of efficient maintenance of the answer to a new type of query: Continuous Maximizing Range-Sum (Co-MaxRS) for moving objects trajectories. The traditional static/spatial MaxRS problem finds a location for placing the centroid of a given (axes-parallel) rectangle $R$ so that the sum of the weights of...
Polymer nanocomposites are a class of advanced materials comprised of soft polymer matrix and nano-filler inclusions. While it has been found qualitatively that enhancements of material properties could be achieved by dispersing inorganic nano-particles into organic polymer matrix, the intrinsic governing principles of such composite has not been thoroughly studied...
Connecting structure and function in nanoscale engineered materials and devices relies on the analysis of the fundamental arrangement of matter, frequently under dynamic conditions. The demand to image structures at fundamental length scales has touched inorganic materials, biology, and frequently hybrid hard/soft materials with unique phenomena driven by heterogeneous components....
In this dissertation, we study different machine learning algorithms including probabilistic, sparse and deep learning based models applied to multi-sensory datasets. In many machine learning problems, samples are collected from more than one source or modality. Also, various feature extraction methods can be used to provide more than one set...
Data mining is multidisciplinary process involving computer science, artificial intelli- gence, and machine learning. The aim of data mining is discovering knowledge from a vast amount of data. This process consists of a set of stages forming a pipeline. This pipeline process consists of multiple steps: 1) Finding the right...