This dissertation argues that royal nomadism, the custom whereby medieval rulers moved between many castles in a predetermined cycle, fundamentally affected the floorplan, use, and adornment of courtly built environments. This argument is a new departure for the study of castles. Scholars of medieval castles acknowledge that rulers passed through...
This thesis forcuses on the development of the transition-edge sensor (TES) for various X-ray science applications, especially for synchrotron beamline experiments. The ultimate aim is to build a detector that has a higher energy resolution than semiconductor detectors, and a higher operation speed than crystal spectrometers. The possible applications include...
Histamine is a well-known potent mediator during the elicitation of IgE-mediated allergic diseases. The most robust, and potentially fatal, response of histamine is observed in patients with food allergy that undergo IgE-mediated anaphylaxis. The key mechanisms of the biology of histamine in allergic disease are well-established, however there are still...
Proper spatiotemporal expression of genes is essential during development. One method of regulation of signaling-responsive genes is at the level of transcription. In this work, I present the adaptation of single molecule fluorescent in situ hybridization for use in Drosophila imaginal disc tissues in order to more precisely quantify transcript...
This dissertation documents the centrality of emotion to Americans’ understanding of, participation in, and critiques of the expanding economy in the first half of the nineteenth century. By then, many people viscerally understood that white men’s attempts to procure credit and escape debt could produce fear, anger, guilt, and sadness....
Today’s romance fiction landscape is drastically different than the early 1980s when its community of readers and writers formalized in the Romance Writers of America and Romantic Times fan magazine. Then, romance fiction was understood to focus on “the interaction between male and female.” Today, romance depicts a variety of...
Part I: Evaluating the relationship between Crosslink Kinetics and Thermodynamics with the hydrogel mechanics. The past two decades have witnessed a surge of applications built upon dynamic covalent chemistry (DCC), both attributed to the scope of developed reactions as well as their modularity.1-3 These reactions have comparable strengths to their...
Bitcoin is a decentralized payment system proposed in 2008 by Nakamoto, who remains anonymous to date. It offers an effective alternative to fiat money or centralized payment systems with advantages on privacy, anonymity, and low international remittance fees. The transactions in Bitcoin payment system are sent through a peer-to-peer network,...
Problems in interpersonal functioning are a major concern. In adults, interpersonal dysfunction is often investigated as it relates to personality disorders (PDs). In fact, researchers have argued that a core of interpersonal dysfunction is what defines personality disorders (Hopwood, Wright, Ansell, & Pincus, 2013). This is perhaps most evident for...
This dissertation explains the heterogeneous effects of armed conflict on sub-national governance in the North Caucasus. While acknowledging the role of inherited institutions, my multimethod investigation shows how they were strategically transformed during the breakup of the Soviet Union, creating unintended consequences and the basis for governance today. My main...
Nonlinear systems with many interacting components often exhibit behaviors that cannot be anticipated, even in principle, by only knowing the properties of the constituent parts and thereby emerge as a result of interactions between the parts. Examples of such systems range from power grids and financial markets to food networks...
Proteins are known to have diverse biomedical functions and excellent catalytic performance; however, they are also fragile outside living cells, challenging their use in industrial applications. Metal-organic frameworks (MOFs) are highly porous crystalline materials that consist of metal cluster nodes and organic linkers. With their rigid structures, MOFs can effectively...
Noble metal nanoparticles (NPs) have shown promise as imaging agents, drug delivery platforms, and plasmonic sensors. Anisotropic gold NPs, such as gold nanostars, have particularly received attention due to their shape-dependent optical and spectral properties. With their 3D anisotropic structure with branches protruding into different directions and high surface areas,...
Drying oils have been used as a binding medium for oil paints since the 15th century. These oil paints transition from a liquid-like paste to a solid-like film as a result of crosslinks forming between the oil molecules. These reactions have been extensively studied chemically, but other material properties are...
Levels of the several different human apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 (APOBEC3; A3) cytidine deaminases vary across different cell types. While levels of nuclear-localized A3s are low or non-existent in primary cells, a nuclear A3 is often upregulated in cancer cells. Increased chromosomal mutagenesis due to nuclear A3...
The literature has established glucokinase (GCK) to be the principal hexokinase (HK) in the liver, operating as a glucose sensor to regulate glucose metabolism and lipid homeostasis. We have recently proposed Hexokinase Domain Containing-1 (HKDC1) to be a novel 5th HK with expression in the liver. Here, we reveal HKDC1...
Supervised learning model is one of the most fundamental machine learning models. It can provide powerful capability of prediction by learning complex patterns hidden in many, sometimes thousands, predictors. It can also be used as a building block of other machine learning tasks, like unsupervised learning and reinforcement learning. Such...
Nanocarriers are drug delivery vehicles that have at least one dimension at the nanoscale (10-9 m). Engineering the nanocarrier surface is a strategy for targeting drug delivery to specific cell types to enhance efficacy and minimize side effects. A useful analogy is to consider how the chassis of an automotive...
Identifying key molecular mechanisms and targets for therapeutic development in sporadic neurodegenerative diseases has been challenging. Therefore, in-depth investigation of genetic forms of disease can provide valuable insight into pathogenic disease mechanisms. The discovery of genetic forms of Parkinson’s disease (PD) has highlighted the importance of the autophagy/lysosomal and mitochondrial/oxidative...
Pollution-intensive industrial manufacturing processes threaten the health of ecosystems and societies through toxic waste streams and energy intensive processes that lead to greenhouse gas emissions. Biological systems present more sustainable routes to many useful industrial chemicals by using enzymes at low temperatures, but the time and effort required to optimized...
Vertebrate brains evolved to facilitate a diverse array of behaviors and internal cognitive processes. Theories of neural function have proposed that neural computation is organized within populations or ensembles of neurons. Here, we identify ensembles of neurons in the striatum, the main input nucleus of the basal ganglia, in which...
Recent progress in the field of nanomaterials has enabled significant advances in optoelectronic devices such as solar cells, light-emitting diodes, photocatalysts, and sensors. Nanoparticles feature superior optical and electronic properties that arise from quantum confinement and therefore cannot be attained used bulk materials. However, further developments in the field of...
Nanomaterials are increasingly incorporated in modern day life, from the biogenic viruses that cause pandemics and the mineral crystallites embedded alongside collagen in our bones, to the anthropogenic nanomaterials that are small but powerful components of sunscreen and paint, swimming pool algaecides and wound dressings, cancer treatments, bicycle frames, and...
Selecting the best material to deliver optimum performance in real-world applications is one of the most significant challenges in engineering. Hundreds of thousands of computationally-predicted, but experimentally unexplored materials exist today in the public inorganic material databases as candidates for consideration. This thesis discusses three projects in the domain of...
Vaccines, such as those against smallpox virus, polio virus, and yellow fever virus, have saved millions of lives. However, many infectious diseases, such as HIV-1, still lack a preventive vaccine. In addition, various vaccines, such as those against Influenza and SARS-CoV-2 require boosters and may not confer 100% lifelong protection...
Integrated Computational Materials Engineering (ICME) has emerged as a transformative paradigm that enables the co-design of products, materials, and their manufacturing processes. A gamut of computational tools, such as manufacturing process simulations and multiscale materials analyses, have been developed henceforth by their respective research communities. However, it remains challenging to...
The Escherichia coli ribosome is a molecular machine capable of sequence-defined polymerization of -amino acids into proteins, a feat unmatched by any other current synthetic catalyst. It is complex in its structure, comprised of 3 RNA parts (the 5S, 16S, and 23S ribosomal RNAs) and 54 ribosomal proteins (r-proteins). Efforts...
Public memory studies in rhetoric have typically neglected how we use shared memories to form, maintain, and pass down social norms through the objects we encounter and the practices we participate in during our everyday lives. This is especially true for children’s toys, because they are understood as essential objects...
“American Sediments” is a study of Black, white, and Indigenous literatures and complementary visual culture centered on the Mississippi River and the Gulf of Mexico, in texts written after Mark Twain’s Huckleberry Finn—still the archetypal version of the Mississippi, but inevitably unaligned with historical changes, cultural diversities, and economic shifts...
Religious buildings have always faced the threat of fire, but an unusual number of church fires occurred in northern France during the 12th century. Despite this prevalence, a sustained study on medieval church fires -- including how and why they started, how people responded when they occurred, theological reckonings with...
Metallic conductivity and broken inversion symmetry were long thought to be contraindicated properties, under the assumption that long-range Coulombic interactions (screened by free charge carriers) were necessary for coordinated polar displacements. Within the past decade, the discovery of polar metals has prompted a rethinking of the relationship between metallicity and...
Recent studies have begun to examine white matter connectivity aberrations in psychiatric populations, such as major depressive disorder. Several studies have found reduced white matter integrity (WMI) in depressed samples, though the location of this reduction is not clear. Incorporating symptom measures of depression severity and rumination may allow for...
Human biologists remain invested in the prospect of developing a ‘biocultural synthesis.’ The primary concerns identified in major touchstones of this effort include the presentation of biological function in terms of social relations, understanding the role that humans play in constructing their own environments for development and evolution, and linking...
Thermoelectric materials have attracted widespread attention in recent decades because of their ability to directly convert thermal energy into electrical energy. Given that waste heat is the primary source of lost energy in the world, the implications of developing better thermoelectric materials are both immediate and far-reaching. Admittedly, large progress...
Cyclic loading, from earthquake, has caused the instability and failure of slopes composed of sensitive clays. During the 1964 9.2 moment magnitude (M) earthquake in Anchorage, Alaska, several slopes comprised of Bootlegger Cove Formation (BCF) clays failed during the strong seismic motion. Some researchers have proposed the use of residual...
New neurons are continuously produced in the subgranular zone of the dentate gyrus of the hippocampus throughout life. These newborn dentate granule cells (DGCs) undergo a stereotyped process of morphological and functional maturation during the first few weeks after differentiation that recapitulates some aspects of postnatal neuronal development. The inhibitory...
This dissertation leverages methodologies from computer science to understand sources of complexity in economic theory. Chapter 1 considers time complexity: how much time is needed to make a decision. Chapters 2 and 3 consider informational complexity: how much and what kind of data is needed to make a decision. I...
Frontotemporal Dementia (FTD) and Amyotrophic Lateral Sclerosis (ALS) are two devastating neurodegenerative diseases that affect 100,000s of people globally. They have a severe adverse impact on society, yet there are currently no early diagnostic tools or disease-modifying therapies available. Despite their clinical heterogeneity, evidence points to these diseases being on...
Sub-wavelength matter’s interaction with far-field light is highly relevant for both fundamental scientific research, as well as many commercial, medical, and defense applications. For example, quantum computation depends on single identical photons produced by quantum dots characterized by far-field sources. Exoplanet detection uses cameras on Earth comprised of micron sized...
This research questions how institutional logics shape and change through the event sequencing of institutional reforms. Literature reviewed on sequences of social events underspecifies the enchainment of events, i.e., the set of social processes that both links events and also renders the sequence meaningful beyond summing its individual events. My...
Superconducting-circuit based platforms are strong contenders in the race to build a quantum computer.While the transmon has had extraordinary success as the leading superconducting qubit modality, there are reasons to believe that other types of qubits could possess relative benefits in terms of noise immunity, anharmonicity, or extensibility. In this...
This work is composed of two separate projects that contribute to the field’s understanding of Neisseria gonorrhoeae genetics and physiology. First, I showed that N. gonorrhoeae mounts a substantial transcriptional program in response to hydrogen peroxide (HP), a prominent reactive oxygen species (ROS) encountered during infection. We measured which strain...
“Coalitional Aesthetics” argues that leftist literary works of the 1930s enacted bonds of solidarity across racial, linguistic, and geographic divides, modeling alternative, non-hierarchical modes of social cohesion. Building on Gramsci’s concept of the coalitional, coalitional aesthetics refers to a set of formal characteristics that insist on the specificity of the...
Black women performers have made, and continue to make, contributions to the U.S.-avant-garde performance canon and Black performance traditions that go largely unaccounted for in academic studies. Research has shown that across temporalities, Black women performers have mobilized experimental avant-garde aesthetics to disrupt and refuse essentialized notions of Blackness in...
The continued existence and use of chemical warfare agents (CWAs) have necessitated the development of materials which can safely and efficiently decontaminate these toxic chemicals in an environmentally benign fashion. Among the most prevalent CWAs, nerve agents (sarin, VX) and blistering agents (sulfur mustard [HD]) are considered the most toxic...
Dual-phase (DP) steels have been widely applied in automobile industry, and are famous for continuous yielding in their corresponding stress-strain curves. The appearance of yield-point phenomena, or discontinuous yielding, is considered undesirable for DP steels. Herein, we take advantage of the undesirable appearance of yield-point phenomena in DP steels as...
This dissertation examines the role of the Botanic Garden at Buitenzorg, created in 1817, in shaping the practice of colonial agriculture in the Netherlands East Indies. It explores how Buitenzorg and its surrounding highland environs were an ideal place for botanical investigations and agricultural experimentation. The initial task of the...
Providing quality transit service to travelers is a constant challenge for transit agencies. The advent of fully-autonomous vehicles (AVs) and their inclusion in mobility service fleets may allow transit agencies to offer better service or reduce their own capital and operational costs. This study focuses on the problem of allocating...
Biological tubes are essential for animal survival, and their functions are highly dependent on tube shape. Analyzing the contributions of cell shape and organization to the morphogenesis of small tubes has been hampered by the limitations of existing programs in quantifying cell geometry on highly curved tubular surfaces and calculating...
This dissertation focuses on quantifying protein folding stability determinants and presenting initial experiments that can guide the development of a novel assay that identifies cell-penetrating miniproteins. First, despite over a century of scholarship on protein folding stability, applying this knowledge to design proteins computationally remains limited. Usually, protein designers generate...