Metalloporphyrins fulfill incredibly diverse chemical roles in biology and photocatalysis, where they act as photosensitizers, redox sites, substrate binding sites, and facilitators of long range electron transfer. Metalloporphyrin chemistry is uniquely tuneable through conformation and functionalization of the porphyrin ring, choice of metal, and interaction with the environment as these...
Spherical Nucleic Acids (SNAs) are nanoparticle bioconjugates that have found use in a wide-range of diagnostic and therapeutic applications. These nanomaterials are composed from inorganic or organic core nanoparticle scaffolds that are functionalized with a dense surface layer of nucleic acids (typically DNA or RNA) that are oriented in a...
E2F-2 is a Retinoblastoma (Rb)-regulated transcription factor induced during terminal erythroid maturation. Cyclin E-mediated Rb hyper-phosphorylation induces E2F transcriptional activator functions. E2F-2-loss causes reduced peripheral red blood cell (RBC) counts, without altering relative abundances of erythroblast subpopulations. To determine how E2F-2 regulates RBC production, we comprehensively studied erythropoiesis using knockout...
The striatum is a subcortical nucleus that regulates a number of complex activities ranging from voluntary action selection to the subconscious formation of habit. The coordination of these operations is mediated by the principle cells of the striatum, spiny projection neurons (SPNs). SPN activity is dictated by a confluence of...
The FDA approvals of afatinib and ibrutinib in 2013 led to a heightened interest in cysteine-reactive covalent inhibitors. However, there are few methods to discover new cysteine-reactive inhibitors for enzymes for which reversible binding scaffolds are not known. To this end, we rationally designed a chemical system to attach a...
Chronic pain is a prevalent and under-treated condition that remains a mystery to the medical system and a major social and economic problem. Unfortunately, there is no single treatment superior to others for relieving chronic pain. While recent scientific discoveries have provided us with functional and anatomical brain biomarkers of...
This dissertation develops and applies coupled marine sulfur and strontium cycle modeling to the highly dynamic Early Cretaceous demonstrating the value of increased model constraint from linkage of biogeochemical cycles with shared forcing factors. A foundation for this work is first provided by review of relevant geochemical, sedimentological, and paleontological...
Glaucoma is a neurodegenerative blinding disease associated with increased intraocular pressure, which is caused by an increased resistance to the outflow of aqueous humor. Although the cause for increased resistance remains unknown, it has been associated with a decreased density of pores in the cells of the inner wall endothelium...
Even though renal blood flow accounts for nearly a quarter of cardiac output, the renal medulla operates in an environment with a scant supply of oxygen. The reason for this apparent discrepancy is thought to be threefold. Blood flow to the outer medulla is less than 50% of that received...
Broadband networks are one of the most economically significant and fastest growing sectors of the Internet. Recent studies have shown that providing broadband Internet access is instrumental for social and economic development. Several governments, as well as the UN, have gone so far as to label broadband access a basic...
Tribological behaviors of lubricated interfaces are strongly affected by the interactions between mating surfaces and the rheological properties of the lubricant between them. This research aims to improve lubrication through two approaches: 1) designing surface textures for lubrication enhancement and adhesion reduction, and 2) developing lubricants of desired rheology.
Molecular...
The behavior of ions in liquids confined between macromolecules determines the outcome of many nanoscale assembly processes in synthetic and biological materials such as colloidal dispersions, emulsions, hydrogels, DNA, cell membranes, and proteins. Theoretically, the macromolecule-liquid boundary is often modeled as a dielectric interface and an important quantity of interest...
Amorphous In-Ga-Zn-O (a-IGZO) and other amorphous oxide semiconductors are attracting increasing attention from the display industry for their high electron mobility, ease of large-area manufacture, and potential for future flexible electronics. However, such amorphous materials often show instability under gate voltage bias, temperature, and illumination stress, with extremely slow relaxation...
Mixing of granular materials is an important engineering process, and a very complex problem. In this thesis, I use granular mixing in a half-full biaxial spherical tumbler (BST), a spherical container that rotates sequentially about two orthogonal axes, to motivate the study of mixing with piecewise isometries (PWIs), a rich...
We argue that a country’s level of wealth inequality can be viewed as a reflection of the quality of its housing rental market. Using the ECB’s Household Finance and Consump- tion Survey (HFCS), we document that the aggregate homeownership rate and various measures of wealth inequality are negatively correlated across...
Lattice models of fermions, bosons, and spins have long served to elucidate the essential physics of quantum phase transitions in a variety of systems. Generalizing such models to incorporate driving and dissipation has opened new vistas to investigate nonequilibrium phenomena and dissipative phase transitions in interacting many-body systems. Circuit- QED...
The properties of crystalline materials are controlled by their composition and by their structure, however, the structure of a crystal is only partly controlled by its composition. Development of specifically directed inorganic syntheses will require an understanding of the dynamics of crystal phase forming processes, especially those processes involved in...
This dissertation presents some development of the single molecular ion precision spectroscopy experiment including construction of the project, spectroscopy state readout, and production of ultracold molecules. Such molecular ion spectroscopy aims at testing fundamental physics such as probing the time variation of electron-proton mass ratio.
The theories and characterization of...
I present research in systems of biomedical relevance consisting of agents near or com- prising surfaces using computational approaches. The research topics include formation of bacterial biofilms, behavior of charged species near stacked, like-charged lamellae, and the the conformational behavior of lamellae with strong self-attraction.
In chapter 2, I present...