Soft materials in nature are formed through programmed self-assembly of biomolecules to create complex architectures and optimized physical properties. It is therefore a key challenge in biomaterials science and engineering to understand the principles that govern the structure and properties of such materials, and the interactions between their different components....
This dissertation investigates the muscle-powered transport technologies that pervaded the Japanese empire. It examines the production, adoption, evolution, and decline of draft animals, rickshaws, human-powered railways, and push-car railways in Japan and colonial Taiwan, 1850-1930. Invented in Tokyo in 1870, rickshaws proliferated across Asia and became a symbol of modern...
Nanoparticle synthesis is capable of producing particles with any combination of structure, chemistry, size, shape, and surface. All of the different combinations of these physical properties can produce nanoparticles with almost countless materials properties suited for many applications. Given this interest in using nanoparticles in so many different fields, including...
One of the central challenges in solid-state chemistry is synthetic control over structure. Owing to limited reactivity of Pb with transition metals at ambient pressure and high temperature as well as the variety of properties that emerge from the few known binary transition-metal–Pb compounds, this research focuses on accessing and...
Newborns are particularly susceptible to severe forms of herpes simplex virus type I (HSV-1) infection including encephalitis and multisystemic disseminated disease. The underlying age-dependent differences in the immune response that explain this increased susceptibility relative to the adult population remain largely understudied. Evidence from animal studies and genetic studies in...
This dissertation consists of three papers on methods for meta-analysis with few studies. These papers are concerned with proper inference from meta-analysis models that combine data from a small number of studies using fixed and random-effects models. Chapter 1 provides an introduction to meta-analysis, the motivation for this work and...
“‘The Indians Say’: Settler Colonialism and the Scientific Study of North America, 1722 to 1848” examines the issue of evidence and credibility within natural history by following the circulation of Indigenous testimony through Anglophone networks of scientific knowledge production. By merging the history of science with Native American and Indigenous...
This thesis proposes a robust multi-pronged approach to study the effect of nanoparticles on cells. In the first place, this work is focused on investigation of the protein corona that accumulates on the surface of nanoparticles internalized by the cells and their poly-pathway effects on protein availability and messenger RNA...
Manufacturing processes are known for their intricacies in changing material shapes and properties. New generations of manufacturing technologies, known as flexible manufacturing, are moving toward design freedom, which allows producing parts with optimized geometries and high customizations at an affordable cost even for low-volume productions. Two prominent flexible manufacturing processes...
This dissertation consists of three studies related to parental employment, maternity leave policy, and early care and education. In study 1, my coauthor and I evaluate the impact of parenthood on men and women’s job performance and career advancement using detailed data from the U.S. Marines. For parents who remain...
This dissertation explores the poetry and culture of the late-Soviet era of Stagnation (1964-1985) through a broadly conceived cultural metaphor of stagnation. The five Russian poets and one American poet in this study- Viktor Krivulin, Alexei Parshchikov, Aleksandr Eremenko, Ivan Zhdanov, Elena Shvarts, and Lyn Hejinian- each engage with a...
This thesis discussed how motifs of height and depth in Black literature highlight Black characters’ inability to form positive racial identities. The thesis uses three canonical pieces of Black literature, Passing, Native Son, and Plum Bun, to demonstrate that Black characters who try to reimagine White space are forced into...
Throughout the last two decades several scholars observed that present-day research into human genes rarely turns toward genes that had not already been extensively investigated in the past. Guided by hypotheses derived from studies of science and innovation, we present here a literature-wide data-driven meta-analysis to identify the specific scientific...
This data was a part of a REDCap survey opened from 5/6/2020 to 7/7/2020. Potential participants with cerebral palsy and their families voluntarily responded to various questions about the motivators, barriers, and goals associated with the decision to participate in cerebral palsy research. Included in this work are the dataset...
Circadian rhythms — physiological, behavioral, and metabolic oscillations with an approximate 24-h period — are controlled by an evolutionarily conserved set of core clock genes operating at the transcriptional and protein level. Entrainable by Zeitgebers (external environmental stimuli such as light, temperature, and food) that modulate time-of-day specific functions, the...
The textbook proceeds with an introduction to theory and concept building, moves to an explanation of causal inference (how do we 'know' whether something is causal?), and then provides a quick introduction to data and hypothesis testing. Following that, each chapter is devoted to a particular research method used within...
In the late Middle Ages, the Italian word fama had a wide semantic range that encompassed such vitally important topics as reputation, honor, community memory, and trustworthiness. In this dissertation, I examine how fama manifested within sodomy prosecutions in late medieval Italy and what insights such prosecutions can give into...
This project studies the formal experimentations with color in postwar cinema as a paradigm for exploring larger theoretical and political questions relating to postwar aesthetics. Borrowing from an understudied concept of Gilles Deleuze’s theory, “the color-image,” my first chapter shifts the conversation away from reading color as strictly symbolic or...
Future large-scale quantum networks will likely require more efficient on-chip devices for quantum key distribution (QKD) systems that can exploit CMOS manufacturing techniques. QKD systems on chip have been produced in a number of material platforms including silicon, indium phosphide, and a range of hybrid structures. Advanced industrial silicon-electronics manufacturing...
Current technologies capable of establishing bioresorbable orthopedic fixation devices and stents have broad utility for biomedical applications to improve constructive tissue remodeling. Recent studies and investigations on bioresorbable conductors, semiconductors, dielectrics, and polymer substrates offer a promising opportunity to propel the existing non-degradable bioelectronic devices to the promising bioresorbable electronics,...
Social engagement, or shared attention between a child and caregiver, is a critical process for language and social development. Although previous EEG studies have investigated child social processing in closely controlled, experimental studies, no study has examined the interactive, reciprocal process of naturalistic social engagement. In my first paper, we...
This dissertation investigates processes controlling the Ca isotope geochemistry (δ44/40Ca) of Icelandic samples, from an atomic to island-wide scale. These studies embody the range of applications for which the Ca isotope proxy can apply in surficial environments, and I offer novel δ44/40Ca data for Icelandic rivers, rocks, minerals, soil, and...
This dissertation is about people living with the ruins of an old city. It demonstrates that ruined cities can provide sources of cultural identity and community life, conditions that contribute to social revitalization in times of crisis. The case study for this dissertation examines the ancient Maya city of Ake,...
Secondary organic aerosol (SOA) particles are a class of highly abundant atmospheric constituents that represent a substantial fraction of carbon within the climate system. A subset of naturally-occurring SOA particles are formed through atmospheric oxidation of biogenic volatile organic compounds (BVOCs), forming oxygenated products of lower volatility that can partition...
This dissertation is about designing learning environments that foreground students’ epistemic agency as they do science in a science classroom. I build on the prior work that combines two important strands in learning sciences - agent-based modeling of complex systems and constructionism to design learning environments. I call such learning...
The microtubule (MT) network and associated regulatory proteins play a critical role during viral infection from facilitating viral particle transport towards the nucleus upon entry to later mediating virion assembly and egress. Many of the precise mechanisms by which viruses commandeer the host MT network to propagate infection remain poorly...
Biological therapeutics have revolutionized the way we treat cancer due to their ability to target tumors discriminately, leaving healthy cells unaffected. However, our inability to tailor the structure of biologics may hamper their optimization for efficacy. This lack of programmability contributes to factors such as immunogenic responses, inability to penetrate...
Proprioception, or the sense of one’s body in space, provides critical feedback that the brain usesto generate controlled movements. When proprioceptive feedback is lost, people find it difficult
to perform even basic motor tasks. Despite its importance, proprioceptive coding of single
neurons in the cuneate nucleus (CN), the most peripheral...
In memory overgeneralization, details from negatively-valenced episodic memories become excessively generalized to unrelated neutral situations. This is a key cognitive distortion associated with major depressive disorder (MDD), generalized anxiety disorder (GAD), and post-traumatic stress disorder (PTSD). Stress promotes memory generalization, and this process likely relies on stress-induced changes in dorsal...
Anthropogenic consumption of fossil fuels releases carbon into the Earth-atmosphere-ocean system at rates unmatched by geologic processes. Yet, some geologic time periods also show evidence of climate forcing related to rapid natural greenhouse gas emissions and can serve as tools to help understand the future trajectory of climate. Geologic events...
This thesis focuses on identifying structure-property-performance relationships in supported nanoparticle catalysts, where an active catalyst material is supported on a high surface area substrate. Identifying these relationships in supported nanoparticle catalysts can be quite challenging, as the complex structure of these catalysts results in numerous potential sources for changes to...
In modern electronics, thermal management becomes one of the most crucial factors in the determination of the performance, quality and lifetime of devices. Especially with the development of internet of things and the digitization of worldwide information, the need for storage of giant amount of data and processing with fast...
Next generation cellular networks are expected to support a massive data traffic volume and satisfy a vast number of users that have latency-critical quality-of-service expectations. Towards serving this demand, it is envisaged that the interference management problem will be the main bottleneck due to the likeliness of a heavily interfering...
Engineering design is a systematic process of identifying needs and their translation into functional systems. This is a cyclic process that alternates between the acquisition of data and the synthesis of said data to inform design decisions. Conventionally, data from physical experiments are used to explore the efficacy of alternative...
The gender imbalance in computer science is getting worse, with computer science being the only Science, Technology, Engineering, and Mathematics (STEM) field in which women’s representation has steadily declined throughout the past few decades. Rectifying this gender imbalance is an urgent need, both because of fundamental issues of equity and...
This dissertation starts with the question of what the global resurgence of authoritarianism means for the welfare states affected by it. The inadequacies of the dominant partisan and institutionalist paradigms within the welfare state literature suggest, however, that a new paradigm for understanding welfare state development is necessary to answer...
Though they lived a century apart and wrote in starkly disparate historical, cultural, and literary contexts, Russian poets Aleksandr Pushkin and Vladimir Mayakovsky were both victims of the posthumous processes of bureaucratization and monumentalization at the hands of the Soviet regime. Their biographies, politics, and poetry were sanitized and manipulated...
Dynamic covalent chemistry (DCC) combines the strength and directionality of covalent bonds with the reversibility of supramolecular interactions. The formation and stability of these bonds are typically regulated by parameters such as temperature, pH, concentration, catalyst loading and light. Light is an exceptionally powerful stimulus because it can be applied...
Stimulus generalization is a critical mechanism for facilitating behavioral flexibility. Generalization allows the brain to reduce computational demands that would otherwise be necessary to create unique representations for each and every encounter while allowing the ability to deal with the complexity of real-world situations. Stimulus generalization is a fundamental cognitive...
With the rapid advancement of machine learning techniques (in particular deep neural networks), computer vision applications have shown great promises in a variety of domains for intelligent cyber-physical systems (CPSs), such as autonomous driving, medical imaging, and vision-based robotic systems. However, while many vision applications provide great on-paper performance, their...
Crystalline and Framework materials make up a broad class of structures which are known for their precise and regular nature. Because these materials have predictable structures and compositions to their networks, they are widely used for several applications including electronics, optics, and catalysis. While these materials are of particular interest,...
This dissertation interrogates the quality of sincerity as it appears throughout John Locke’s work on religious toleration and Christian theology. Sincerity, and the framework it provides, offers a means to draw together his political and theological works, as well as to appreciate both his radical potentialities and conservative impulses. The...
Part I:Current approaches to synthesize π-conjugated polymers are dominated by thermally driven, transition-metal-mediated reactions. Herein we7 show that electron-deficient Grignard monomers readily polymerize under visible-light irradiation at room temperature in the absence of a catalyst. The product distribution can be tuned by the wavelength of irradiation based on the absorption...
Cobalt(III) Schiff-base complexes (Co(III)-sb) have been utilized in the literature as antibacterial, antiviral, and inhibitory agents. Recent work has utilized their ability to displace endogenous metals from metalloproteins that exhibit aberrant gain of function pathologies in human disease. Specifically, in this dissertation Co(III)-sb has been applied as inhibitors of pathogenic...
Travel time is a key aspect of capturing and evaluating the operational performance and service quality of transportation systems, and travel time improvement is a common objective for travelers, service providers, transportation practitioners and agencies. However, the reliability of travel times, including the probability of unexpected delays, is an important...
At its core, the purpose of microscopy is to make objects and their underlying structures visible under high magnification. With the remarkable progress of electron microscopy, the sub-micron “high” magnification of light microscopy has been completely refashioned to encompass subatomic length scales. Unfortunately, higher-magnification does little to negate existing interpretability...
Plasmonic nanoparticles have very large absorption cross sections and can concentrate the local density of photon states on the nano scale. When they are coupled to molecules or semiconductor nanocrystals and form different hybrid nanostructures, various light-matter interaction processes can be significantly enhanced or manipulated, including optical responses like fluorescence...
As fourth-generation synchrotron x-ray sources start to come online, they bring with them the promise of increased imaging speed and resolution for current imaging modalities, while enabling entirely new ones. Employing the increased brightness at hard x-ray energies begins with having efficient focusing optics in place. Zone plates are popular...
Recently, machine learning and deep learning, which have made many theoretical and empir- ical breakthroughs and is widely applied in various fields, attract a great number of researchers and practitioners. They have become one of the most popular research directions and plays a sig- nificant role in many fields, such...
Fluctuations are ubiquitous in physics.For a system close to a phase transition, the order parameter fluctuations are strong.
In this thesis we study the pair fluctuations in liquid 3He when it is close to the superfluid phase transition.
Liquid 3He is a neutral Fermi liquid, which allows zero sound to...
The purpose of my thesis research has been to understand the formation of mitotic chromosome structure by using chromosome micromanipulation. Folding mitotic chromosomes from their loose interphase form into their individualized, compacted form is required for easy handling of the chromosomes for cell division. This process is facilitated by several...
This dissertation describes three studies which develop a deeper understanding of both failure and performance in human service referral networks focusing on veterans. It draws on theories across network science, public administration, organizational communication, and technology design to explore three major questions: 1) how stakeholders in veteran care networks define...
In the past decade, the e-hail service provided by transportation network companies (TNCs) gained popularity in major cities around the world. By allowing passengers to virtually “hail” vehicles on mobile phones, e-hail has revolutionized the matching process in ride-hail, drastically reducing the existing search friction. However, previous studies found the...
Creating sustainable and clean sources of energy is an outstanding problem of importance for the current generation of scientists to solve. Organic photovoltaics (OPVs) are a promising renewable energy source but require improvements to their architectures and better fundamental understanding of the effects of organic chromophore morphology on the resulting...
Part I - Experimental Studies of Spin Waves in a Micrometer-Thick Yttrium Iron Garnet filmAn investigation of spin wave dispersion in a micrometer-thick ferrimagnetic yttrium iron garnet (YIG) film has been conducted in various regimes. In the linear excitation regime, the dispersion of spin waves was characterized in an yttrium...
Over the past decade, wearables have become pervasive in our lives. Healthcare wearables like a smartwatch continuously monitor personal health status and provide personalized feedback to motivate progress towards medically recommended goals. While present set of on-body electronics empowers users to visualize health status outside of clinic spaces, its traditionally...
How well do Probabilistic Seismic Hazard Analysis (PSHA) maps forecast ground shaking due to earthquakes? This question is central to ensuring the safety, security, and economic well-being of citizens. PSHA maps are an important product for users including seismologists, engineers, insurers, and policymakers. PSHA, which has been used worldwide for...
Parshin's conjecture expects that the higher algebraic $K$-groups of smooth projective varieties over a finite field are torsion. In this thesis we prove that with the assumption of finite generation of higher \'etale algebraic $K$-theory of smooth projective varieties over a finite field, one can reduce Parshin's conjecture to the...
Electrochemical devices play a vital role in the efforts towards a sustainable green future. Solid acid based electrochemical cells, employing super protonic CsH2PO4 (CDP) as the electrolyte component, offer unique application advantages due to their operability at intermediate temperatures 250°C. At these temperatures, one can achieve improved reaction kinetics over...
The eukaryotic genome is packaged into chromatin. The nucleosome, the basic unit of chromatin, is composed of DNA coiled around a histone octamer. Histones are among the longest-lived protein species in mammalian cells, due to their thermodynamic stability and their associations with DNA and histone chaperones. Histone metabolism plays an...
A greater number of strategies in one’s coping repertoire (i.e., the number of diverse strategies used across stressors or use habitually across several situations) may be beneficial and a precursor to coping flexibly across situations (Bonnano & Burton, 2013). Indeed, previous studies have demonstrated a benefit of having larger number...
To combat the rise of antibiotic-resistant pathogens in clinical settings, it is necessary to understand which environments and conditions select for antibiotic resistance. Analysis of environments hypothesized to select for antibiotic resistance has been revolutionized by metagenomic sequencing. The metagenomic pool of DNA sequences can be probed in silico using...
In recent decades, mass loss from glaciers and ice caps (GICs) worldwide has accelerated, contributing significantly to the observed sea–level rise. Their continued melt is also expected to alter local hydrological systems, affecting freshwater availability and quality. Despite these problematic impacts, little is known about GIC variations prior to the...
There is more responsibility on heaven and earth than dreamt of in most philosophy. This dissertation explores three debates in three sub-fields of philosophy, highlighting in each responsibilities agents find themselves with whether they like it or not. In the chapter Trust Logic, Not Tortoises, I propose an answer to...
Successful restoration depends on the establishment and survival of selected species, and sowing seed is the most cost-effective method to ensuring a successful restoration. Generally, a locally sourced seed is thought to be better adapted to local environmental conditions and, therefore, more likely to thrive. In addition, a local seed...
One of the challenges of interrogating the increasing precarity of living conditions in some regions of the Americas is seeking for a way of productively addressing the intersections between inequality, climate crisis, and systemic violence. This dissertation analyzes a corpus of contemporary Latin American and Latinx literary and visual works...
The study of solid-state organic chromophores has been soaring in the last decade owing to their wide applications in organic photovoltaics. These organic chromophores can absorb light in the visible region and form free charge carriers with proper design in molecular structure and device fabrication. In solid state, chromophores are...
The dentate gyrus is the first region for information processing within the classic hippocampal trisynaptic circuit, and this position makes it an important structure for the formation of associative memories. The dentate gyrus contains two major types of excitatory neurons: granule cells and mossy cells. While previous work has shown...
This dissertation examines how eighteenth-century ethics were reimagined by Enlightenment-era and Romantic women writes to better afford the grounds for political revolution and responsive reform. Whereas Adam Smith’s theatrical model of sympathy casts individuals in the passive role of spectators who feel deeply but are not necessarily moved to act,...
Peptides consists of a series of amino acids connected via an amide type of covalent chemical bond. A diverse field of applications such as biosensors,2 catalysis,4 and biomedicine6 include the oligomeric forms of peptides due to their genuine features comparing to other biomacromolecules. Particularly, peptides in the field of biomedical...
Nanocarriers, structures with at least one dimension on the nanoscale (1-1000 nm), have been engineered for delivery of various cargoes. The shape and flexibility of nanocarriers are important parameters that influence their biological performance. Self-assembling polymeric filamentous nanocarriers, known as filomicelles (FM), are of great interest to nanomedicine due to...
Ovulation is the process by which an ovulatory follicle releases a mature egg and is essential for fertility and maintaining female reproductive cycle. Understanding the mechanisms of ovulation have implications for the development of non-hormonal contraceptives and treatments of anovulatory diseases. We developed a 3D alginate encapsulated in vitro follicle...
Receptor for activated C kinase 1 (RACK1) is a core small (40S) ribosomal subunit protein whose structure is highly conserved among eukaryotes apart from a C-terminal extended loop. We previously showed that a poxvirus kinase phosphorylates this flexible loop in human RACK1, mimicking endogenous negative charge in plant RACK1 to...
Nanocarriers are drug delivery vehicles that have at least one dimension at the nanoscale (10-9 m). Engineering the nanocarrier surface is a strategy for targeting drug delivery to specific cell types to enhance efficacy and minimize side effects. A useful analogy is to consider how the chassis of an automotive...
Vaccines, such as those against smallpox virus, polio virus, and yellow fever virus, have saved millions of lives. However, many infectious diseases, such as HIV-1, still lack a preventive vaccine. In addition, various vaccines, such as those against Influenza and SARS-CoV-2 require boosters and may not confer 100% lifelong protection...
Cyclic loading, from earthquake, has caused the instability and failure of slopes composed of sensitive clays. During the 1964 9.2 moment magnitude (M) earthquake in Anchorage, Alaska, several slopes comprised of Bootlegger Cove Formation (BCF) clays failed during the strong seismic motion. Some researchers have proposed the use of residual...
The cuprate superconductor HgBa$_2$CuO$_{4+\delta}$ (Hg1201) has one of the simplest physical structures of the cuprates making it an ideal candidate for nuclear magnetic resonance (NMR) measurements. Here we discuss our NMR experiments aimed at studying the mixed state of two under-doped single crystal Hg1201 samples at high magnetic fields.
This dissertation reports on a 16-week ethnographic study of politicized caring within a museum-based tinkering program for high school students called the FabYouth program. Drawing on a data set that includes 16 field notes, 785.83 minutes (about 13.1 hours) of ethnographic audio-video recordings, 280 photographs, and ten student interviews, I...
Realizing electromagnetic metamaterials which operate in the optical regime requires creating precise arrangements of sub-100 nm building blocks. As such, fabricating these materials using conventional lithographic methods is extremely costly. On the other hand, bottom-up assembly of nanoparticles into crystalline superlattices offers opportunities to explore the scalable fabrication of 2-...
In my dissertation, Knowing How to Feel: mapping affective epistemologies of ignorance through numbness, I examine the ways by which numbness contributes to harmful “epistemic resilience,” or the phenomenon whereby systems of meaning remain stable despite counter evidence or attempts to alter them (Dotson 2014). I am most importantly concerned...
Protein homeostasis, or proteostasis, is essential for preserving all cellular functions and involves a balance of protein synthesis, folding, trafficking, and degradation. A collapse in proteostasis is a common feature of many neurodegenerative disorders that are characterized by the accumulation of insoluble protein aggregates in the brain. Parkinson’s disease (PD)...
This dissertation examines the interactional mechanisms that undergird exercises of regulatory authority in expert work settings. In the first chapter, I argue that, in the aftermath of a crisis (in this case, induced by a major regulatory event), organizational actors face environments of high uncertainty which challenge rational models of...
In recent years, the social sciences have been ensnared in a crisis in which many research findings cannot be replicated (Ioannidis, 2005; Open Science Collaboration, 2015; Camerer et al., 2016; Makel & Plucker, 2014). This crisis has been attributed to a variety of problems including lack of transparency about research...
This dissertation addresses two distinct but related questions. First, how should we conceive of social freedom? Second, given this conception, what ideals would best satisfy the demands we are under as citizens and moral agents? In answer to the first question, I defend a novel account of social freedom, where...
Regulatory T (Treg) cells are required to control immune responses and maintain homeostasis, but are a significant barrier to antitumor immunity. Conversely, Treg instability, characterized by loss of the master transcription factor Foxp3 and acquisition of proinflammatory properties, can promote autoimmunity and/or facilitate more effective tumor immunity. A comprehensive understanding...
Existing nonlinear optimization methods have proven reliable over the past few decades for a wide range of applications but have critically relied on accurate function and gradient evaluations. Modern nonlinear optimization problems arising from machine learning and scientific computing applications are increasingly complex and large scale, which make accurate evaluations...
This dissertation reorients political theory to the concepts of use and utility for a more critical and emancipatory perspective on contemporary communal life. The reorientation entails a recovery of Aristotle’s and Marx’s overlapping approaches to use, whose contemporary reception indexes the surprising alignment of critical political theory with economics. That...
Semiconductor nanocrystals possess unique photophysical properties that make them desirable for many optoelectronic applications such as photovoltaics, LEDs, and quantum computing. When the size of a semiconductor is reduced to below the excitonic Bohr radius of the material, its carriers becomes quantum confined resulting in drastic changes to optical, electronic,...
Nanomaterials offer unique properties not seen in their macroscopic kin. They can be used in printed electronics, as catalysts, and so much more. However, their diminutive size complicates materials processing techniques. They can easily aggregate become no longer useful. A solution to this is to use a polymeric surfactant such...
The field of robot design mostly focuses on careful construction of complex control and planning algorithms (e.g., tuning neural network weights) which bear sole responsibility for improving task performance, while the robot’s body is often assumed to be part of the environment. In nature, however, biological organisms co-evolve both their...
One of the most pressing open questions in star formation is the role of magnetic fields relative to turbulence and gravity, and how these three processes set the stellar initial mass function and star formation efficiency. In this work, we present the state of BLAST-TNG (the Balloon-borne Large Aperture Submillimeter...
Critical pedagogies offer a particular orientation towards education that understands the process of learning as inherently political. These frameworks demand explicit political attention by teachers to support student development of practices needed to create a liberatory world. Recent work evidences the positive impact critical pedagogies have on students academically, civically,...